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pdf/a - validation problem - The F key is missing

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I tried to convert my thesis from Latex to required pdf/a - version 2u. However, two problem occured from a validation test.

Firt one: "The key F is required but missing."
I failed with googling it, i think that it has maybe something to do with links. I came across one forum, but I do not understand (probably they are not working in LaTeX) - https://forums.adobe.com/thread/1023316
Then, I tried to find the sollution on our forum, but no one had really the same problem. E.g. I tried to use sollution from this post PDF/A with hyperref on TeX Live 2013, but the validator told me, that I have pdf1.4, not even pdf/A.
Does anybody know, what should I change to get rid of this "F key" or how to deal with it?

Second problem, which is probably not so important: The document contains hidden, invisible, non-viewable or non-printable annotations.
I don't know, what they mean by that exactly. Is there a problem with my notes (meaning text starting with %). Does anybody know the sollution?

My code in preambule, packages used are at the end:

    \documentclass[openany,hidelinks]{book}      \usepackage[utf8]{inputenc}      \usepackage[T1]{fontenc}      \usepackage[czech]{babel}      \usepackage{fancyhdr}      \usepackage{float}       \usepackage{graphicx}      \usepackage{amsmath,amssymb,amsthm}      \usepackage{color}      \usepackage[round]{natbib}      \usepackage{hyperref}      \usepackage{bookmark}      \usepackage[normalem]{ulem}        \newcommand{\myand}{\&\ }    \usepackage[acronym]{glossaries}      \makeglossaries      \useunder{\uline}{\ul}{}      \numberwithin{equation}{chapter}      \usepackage{longtable}         \usepackage{array}      \usepackage{regexpatch}      \makeatletter      \xpatchparametertext\@cline{-}{\cA-}{}{}      \usepackage{placeins}       \usepackage{booktabs}      \usepackage{caption}       \usepackage{pdfpages}       %for pdfA      \usepackage{xmpincl}      \usepackage[a-2u]{pdfx}      \usepackage{lmodern}      \usepackage{textcomp}  

I would be very grateful for every answer! :) Thank you.

The problem is with my bibliography! Another validator gave me exact pages of the problems. And it looks like this: root/document[0]/pages[54](825 0 obj PDPage)/annots[16](821 0 obj PDAnnot)
error_1 Second error has this description:
root/document[0]/pages[64](935 0 obj PDPage)/contentStream[0](936 0 objPDContentStream)/operators[556]/font[0](BCVKHY+LMMathSymbols10-Regular)

root/document[0]/pages[64](935 0 obj PDPage)/contentStream[0](936 0 objPDContentStream)/operators[611]/font[0](HVVRCK+LMMathSymbols7-Regular)


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